Syntax: makee (object file) (star file) (flat file)
                     [arc file]  [2nd arc file]
  
    [arc1add=(FITS file)]  [arc2add=(FITS file)]  [arcmode=]
    [mode=]  [raw=]  [bias=(file)]  [-nobias]  [lpr=]
    [eperdn=]  [ronoise=]  [pf=(file)]  [order=n,n,..] [comm=s]
    [sl=] [hw=] [-atm] [-novac] [-noskyshift] [skyshift=]
    [-nohc]  [-showmask]  [object=]  [observer=]  [log=]
    [oko=n,n,...]  [-nox]  [uop=]  [ccd=]
    [ BlueOrders= ]  [ -koa | -koa_products ]
  
    [-options] (show description of options)
    [-help   ] (show description of options)
  
  object file : Object FITS file to be reduced.
  star file   : Bright star FITS file to define trace.
  flat file   : Flat field FITS file.
  arc file    : Arclamp FITS file (optional).
  2nd arc file: Second Arclamp FITS file (optional).
  
  mode=      : 1 = Full extraction (default).
               2 = Mask CRs but do straight sum of object.
               3 = Mask CRs in sky only,straight sum of object.
               4 = Median of whole order.
  
  raw=dir   : Directory path for raw FITS files.
             (You can also set environment variable MAKEERAW,
                or do "ln -s (directory name) raw".)
  bias=file : FITS filename of bias (short dark) image.
  -nobias   : Do not apply bias correction.
  pf=file   : Use this parameter file instead of "makee.param".
 order=n,n,.. : Only extract orders n,n,.. where the bluest
 oko=n,n,..   : Only use these orders for trace centroids.
 uop=file     : Load User Object Positions data file.
       -nox : No Extraction (exit after profile computation).
  BlueOrders=  : Use this many orders for HIRES2 CCD#1 .
       ccd= : CCD location number for HIRES2 data.
              (This can be 1, 2, or 3, or blue, green, or red,
               or b, g, or r.)
   -showmask: Set pixels in masked (bad) regions to zero in
              reduced spectra. These regions will always appear
              as -1.0 in the variance spectra.
   comm=s   : Add the comment "s" to each output spectrum.
   sl=v     : Give estimate of slit length in pixels.
   hw=v     : Give object half width in pixels explicitly.
   lpr=     : Send output to this printer.
  -lesspr   : Send less output to printer (just Flux-*).
  -atm      : Apply atmospheric extinction correction.
  -novac     : No vacuum wavelength scale correction (air wave.)
  -nohc      : No heliocentric wavelength correction.
 -noskyshift: Do not apply automated skyline shifted scale.
  skyshift=v: Override automated skyline wavelength scale 
              shift, set shift to v pixels.
   object=  : Reset "OBJECT" name to this string (~=blank).
  observer= : Reset "OBSERVER" name to this string (~=blank).
     log=   : Filename for log file for output messages.
  arc1add=  : Arclamp exposure to provide additional lines to
              wavelength calibration of first arclamp.
  arc2add=  : Arclamp exposure to provide additional lines to
              wavelength calibration of second arclamp.
  arcmode=  : Arclamp wavelength scale averaging mode:
                 0 : Average scales of 1st,2nd arclamps(def.).
                 1 : Shift scale to 1st arclamp.
                 2 : Shift scale to 2nd arclamp.
   eperdn=  : Inverse gain (electrons per digital number).
   ronoise= : Readout noise in electrons.
    { If "eperdn=" or "ronoise=" is not given, use (1) values
      in header, (2) values in "eperdn.dat" and "ronoise.dat",
      or (3) default values.
  
 The following are usually only used for testing purposes:
   -profpoly : Write out profile polynomial fit plots.
   -test     : Write out prior/post masking test images.
   -notwhole : Read ee.get file for trace information.
   -trace    : General testing...
              MAKEE VERSION= 5.2.2 : February 2008